1.FADD
D. ananassae ATGTCCAAGGTAAATGGCTGGAATGGGTGTGGAGCGGGAACGCACGGAAATGGGAGCAGTGCCTCCTTACCACCGACT
D. melanogaster ------.T..CGT..........C..A..C...AT...CGT...G.TG..C..A....AC.G.G..A..GGTTTAT.C
D. sechellia ------.T..CGT..........C..A..C...AT...CGT...G.TG..C..A....AC.G.G..A..GGCTTAT.C
D. simulans ------.T..CGT..........C..A..C...AT...CGT...G.TG..C..A....AC.G.G..A..GGCTTAT.C
D. erecta ------.T..C.T..........C..A..C...AT...CGT...GATG..C....T..AC.G....A..GGCTTAT.C
D. yakuba ------.T..CGT..........C..A..C...AT..ACGTT..G.TG..C.......AC.G....A..GGTTTAT.C
D. ananassae CCTAAATACTTGCGCAGCACAGAACTCCGGCGCGTTGAGGACAACGACATTTACCGGCTGTCCAAAATCCTTGACGAA
D. melanogaster T.G..G..T.CT....A...G..G..G..A..............T..............TG.......A..A..T..G
D. sechellia T.G..G..T.CC....A...G..G..G..A.....C........T..............TG.......A..A.....G
D. simulans T.G..G..T.CC....A...G..G..G..A.....C........T..............TG.......A..A.....G
D. erecta T.A..G....CC...........G..G........C...........T..G........TG..........A..T..G
D. yakuba T.A..G....CC........G..G..G..A.....C.......................TG..........A......
D. ananassae AACGCCTGTTGGCGCAAGCTCATGTCGATAATACCGAAGGGCCTGGATGTACAGACTTCAAGCGCTGCCGGCGGTTTA
D. melanogaster ...T.A..C........AT.G........C.....C......A.......G...G.C.GC....GA.....AT.C..G
D. sechellia ...T.A..C........A..G........C.....C......A.......G...G.C.GC....GA.....AT.C...
D. simulans ...T.A..C........A..G........C.....C......A.......G...G.C.GC....GA.....AT.CC..
D. erecta ...T....C.....T.....G.....C..T.....C......A.......G..AG.C.GC....GA.....AA.C...
D. yakuba ...T.T..C...........A.....T..C.....C......A.......G...G.C.GT....GA.....AAAC...
D. ananassae AACTTTCCAAATGCCATAAAGAAAGGATTCAAGTACACAACACAGGACGCACTGCAAATTGACGAGGCGGCTAACAGA
D. melanogaster ..T.....GGCG.AA..C..A..G.....T........TG.G.......TGT.C..G...........T..A...C..
D. sechellia ..T.....GGCG.AA..C..A..G.....T........TG.G.......TGT.C..G...........T..G...C..
D. simulans ..T.....GGCG.AA..C..A..G.....T........TG.G.......TGT.C..G...........T..G...C..
D. erecta ..T.....TGCG.AA..C..A........T..A.....TG.G......ATGT.C..G...........T..A...C..
D. yakuba ..T......GCG.AA..CC.A........T..A..TT.TG.G...A...TTAGC..G...........T..A.G.C..
D. ananassae CTAGCACCCGACCAGAGCAAGTCCCAGATGATGATCGATGAGTGGAAGACGTCTGGAAAATTGCACGAGCGGCCAACA
D. melanogaster ...C.G..G.....A........G..............C...........C.....C..GC.CA..........C..G
D. sechellia ...C.G..G.....A.......................C...........C.....C..GC.CA..........C..G
D. simulans ...C.G..G.....A.......................C...........C.....C..GC.CA..........C..G
D. erecta ..GC.G..G..............G..A...........C...........C..C..C..GC.CA..........T...
D. yakuba ..GT.G..A..............G..A...........C........A..C.....C..GC.TA..........C..G
D. ananassae GTGGGCGTATTGCTCCAGCTCCTGGTTCAGGCGGAATTGTTCAGTGCAGCCGACTTCGTTGCGCTGGACTTCCTTAAC
D. melanogaster ..T..G...........A..T.....G.....A..GC.C........G..A.....T..G..A..A........A..T
D. sechellia ..T..G..G........A..T.....G.....A..GC.C........G..A.....T..G..A..A........A...
D. simulans ..T..G------------------------------------------------------------------------
D. erecta .....T..G........A..T.....G.....A..GC.C........G..A.....T..G..C..T........G..T
D. yakuba .....G..G........A..T.....G.....A..GC.C........G..A.....T..G..A..A........A..T
D. ananassae GAGCCCAAGCCAGATCGCCCCAGCGACGGACCAGCAGCACCTATAAGT------------------------------
D. melanogaster ...T...CC..T.CC..G..TGTT.....T..C.GT..G.TC.....C------------------------------
D. sechellia ...T...CC..T.C...G...GTT.....T..C.GT..G.TC.....C------------------------------
D. simulans ------------------------------------------------GGTGTTGCTCCAACTTCTGGTGCAAGCAGA
D. erecta ...T...CC..T.C...G..GGTT.....T..T.GT..G..C..T..C------------------------------
D. yakuba ...T...TC..T.T...G..G.TT.....T..C.....G..C..C..C------------------------------
D. ananassae ---------------------------------------------CTGGACTTAACGGAGCTTCTTGACGAAACCATG
D. melanogaster ---------------------------------------------..T---------.....G..G..A..GGAA...
D. sechellia ---------------------------------------------..T---------.....G..G..A..GGAA...
D. simulans GCTCTTCAGTGCGGCAGACTTTGTGGCACTAGACTTCCTAAACGC..T---------.....G..G..A..GGAA...
D. erecta ---------------------------------------------...---------.....G..G..A..GGAA...
D. yakuba ---------------------------------------------...---------.....G.CG..T..TGA....
D. ananassae GATGTTGACGGCGACGGCCTCAAT------------CCGAGTCCTTCAAATGTG------GCTGCCCAGGGAAGTATT
D. melanogaster ..A..G...AA...G..G..G.GCCTCAAATACCAGT.A..CA..G.C.C.C.TGGGGCA.AC..T..A..T..CG..
D. sechellia ..A..G...AA...G..G..G.GCCTTAAATACCAG..A..CA..G.C.C.C.TGGGGCG..C..T..A..T..CG..
D. simulans ..A..G...AA...G..G..G.GCCTTAAATACCAG..A..CA..G.C.C.C.TGGGGCG..C..T..A..T..CG..
D. erecta ..A..G...AA...G..AG.G.GCCTCAAATACCAGT.A..CA..G.CGC.C.TGGGGGA.GC..T..A..T..CG..
D. yakuba ..A..G...AA...T..G..G..CCTCAGATACCAGTTA..CA..G.CTC...TGGGGGA.GC..T..A..T..CG..
D. ananassae GGCCTTAATTTGGACAACT
