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User_Manual_LSx_v1.1 .pdf

User_Manual_LSx_v1.1.pdf
Preview of User_Manual_LSx_v1.1 .pdf
🔗 Source: genev.unige.ch
📊 Size: 351 KB
👤 Author: C RIVERA-RIVERA
⬇️ Downloads: 216

Summary

LSX is a script in R for running LS³ and LS⁴ phylogenetic data subsampling algorithms to reduce lineage rate heterogeneity. It requires R, PAML, and specific R packages, and involves several input files, including gene sequence alignments, a guide tree, and a lineage-taxon file. The script can be run using a Linux/Mac or Windows command, and produces output files showing which sequences were flagged or kept. LSX is suitable for cases with 3 or more monophyletic lineages where relationships may be affected by lineage evolutionary rate heterogeneity.

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Description

LSX is a script in R for running LS³ and LS⁴ phylogenetic data subsampling algorithms to reduce lineage rate heterogeneity.

Technical Information

  • File Format: PDF
  • File Size: 351 KB
  • Pages: 13
  • Language: EN
  • Author: C RIVERA-RIVERA
  • Total Downloads: 216
  • Last Updated: 7 days ago

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