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Additional File 5:Reduced Yeast Glycolysis Model With A Prespecified Number Of Deleted Complexes.(PDF 17 KB).pdf

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Preview of Additional file 5:Reduced yeast glycolysis model with a prespecified number of deleted complexes.(PDF 17 KB)
🔗 Source: static-content.springer.com
📊 Size: 16 KB
📄 Pages: 5 pages
⬇️ Downloads: 122

Summary

This is a Matlab function named `FullmodelGF1` that takes an input vector `input` and returns an output vector `output`. The function models a complex biochemical system with 13 species (GLci, G6P, F6P, F16P, TRIO, BPG, P3G, P2G, PEP, PYR, ACALD, NADH, NAD) and multiple reactions.

The function first defines the state vector and parameters, then calculates the reaction rates for each reaction using mass-action kinetics and Michaelis-Menten kinetics. It also calculates the weighted Laplacian matrix and the external reaction rates.

Finally, it calculates the reaction rates by multiplying the weighted Laplacian matrix with the state vector and adds the external reaction rates to obtain the output vector. The output vector represents the rates of change of the concentrations of the 13 species in the system.

The model includes reactions such as glycolysis, gluconeogenesis, and fermentation, and takes into account the effects of ATP, ADP, NAD, and NADH on the reaction rates. The function can be used to simulate the dynamics of the biochemical system and study the effects of different parameters and initial conditions on the system's behavior.

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Description

This is a Matlab function named `FullmodelGF1` that takes an input vector `input` and returns an output vector `output`.

Technical Information

  • File Format: PDF
  • File Size: 16 KB
  • Pages: 5
  • Language: EN
  • Total Downloads: 122
  • Last Updated: 7 days ago

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